STRINGSTRING
Dde_1215 Dde_1215 Dde_1216 Dde_1216 Dde_1214 Dde_1214 Dde_1209 Dde_1209 Dde_1210 Dde_1210 Dde_1211 Dde_1211 Dde_1212 Dde_1212 Dde_1213 Dde_1213 Dde_3394 Dde_3394 Dde_1207 Dde_1207 Dde_1208 Dde_1208
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Dde_1215KEGG: aap:NT05HA_1013 HNH nuclease; PFAM: HNH endonuclease; SMART: HNH nuclease. (203 aa)    
Predicted Functional Partners:
Dde_1216
KEGG: dsa:Desal_1742 alkaline phosphatase; PFAM: Alkaline phosphatase; SMART: Alkaline phosphatase; Belongs to the alkaline phosphatase family.
     
 0.525
Dde_1214
PFAM: Rubrerythrin; KEGG: dvl:Dvul_0832 hypothetical protein.
       0.457
Dde_1209
PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: drt:Dret_0196 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
       0.429
Dde_1210
PFAM: Methyl-viologen-reducing hydrogenase, delta subunit; KEGG: dba:Dbac_0851 methyl-viologen-reducing hydrogenase delta subunit.
       0.429
Dde_1211
PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal; KEGG: drt:Dret_2313 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
       0.429
Dde_1212
KEGG: dba:Dbac_0853 hydrogenase, putative.
       0.429
Dde_1213
Sulfhydrogenase subunit gamma (sulfur reductase); PFAM: Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; Oxidoreductase FAD-binding region; Oxidoreductase FAD/NAD(P)-binding; KEGG: dsa:Desal_0596 oxidoreductase FAD/NAD(P)-binding domain protein.
       0.429
Dde_3394
KEGG: tcx:Tcr_0692 hypothetical protein.
   
    0.410
Dde_1207
KEGG: dsa:Desal_0602 heterodisulfide reductase, C subunit.
       0.404
Dde_1208
KEGG: dba:Dbac_0849 CoB--CoM heterodisulfide reductase; PFAM: Cysteine-rich region, CCG.
       0.404
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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