STRINGSTRING
Dde_1241 Dde_1241 Dde_1628 Dde_1628 Dde_1239 Dde_1239 Dde_2051 Dde_2051 Dde_2354 Dde_2354 Dde_2807 Dde_2807
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_1241PFAM: Acyltransferase 3; KEGG: tfu:Tfu_1701 hypothetical protein. (675 aa)    
Predicted Functional Partners:
Dde_1628
Diguanylate cyclase/phosphodiesterase with CBS domains; TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Cystathionine beta-synthase, core; Diguanylate cyclase, predicted; KEGG: dvm:DvMF_0617 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Cystathionine beta-synthase, core.
  
    0.406
Dde_1239
Hypothetical protein.
       0.404
Dde_2051
KEGG: dvl:Dvul_1371 nuclease; PFAM: Staphylococcal nuclease (SNase-like); SMART: Staphylococcal nuclease (SNase-like).
   
  
 0.403
Dde_2354
PFAM: Staphylococcal nuclease (SNase-like); KEGG: dvm:DvMF_0873 nuclease (SNase domain protein).
   
  
 0.403
Dde_2807
PFAM: Staphylococcal nuclease (SNase-like); KEGG: vok:COSY_0067 nuclease.
   
  
 0.403
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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