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Dde_1272 Dde_1272 Dde_1273 Dde_1273 Dde_3055 Dde_3055 Dde_3039 Dde_3039 cutC cutC Dde_3237 Dde_3237 Dde_3078 Dde_3078 Dde_0473 Dde_0473 Dde_1110 Dde_1110 Dde_1257 Dde_1257 Dde_0475 Dde_0475
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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Dde_1272SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Glycyl radical enzyme-activating; KEGG: dvl:Dvul_0490 glycyl-radical activating family protein; PFAM: Radical SAM; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup. (309 aa)    
Predicted Functional Partners:
Dde_1273
PFAM: Pyruvate formate-lyase, PFL; Formate C-acetyltransferase glycine radical; KEGG: dvu:DVU2824 formate acetyltransferase.
 
  
 0.968
Dde_3055
PFAM: Pyruvate formate-lyase, PFL; Formate C-acetyltransferase glycine radical; KEGG: cno:NT01CX_1220 pyruvate formate-lyase.
 
  
 0.938
Dde_3039
PFAM: Pyruvate formate-lyase, PFL; Formate C-acetyltransferase glycine radical; KEGG: pca:Pcar_0937 pyruvate-formate lyase.
 
  
 0.928
cutC
Formate C-acetyltransferase; Glycine radical enzyme that catalyzes the cleavage of a C-N bond in choline, producing trimethylamine (TMA) and acetaldehyde. Is involved in the anaerobic choline utilization pathway that allows D.alaskensis to grow on choline as a source of carbon and energy. Is strictly specific for choline as substrate.
 
  
 0.915
Dde_3237
SMART: Pyruvate-flavodoxin oxidoreductase, EKR domain; TIGRFAM: Pyruvate-flavodoxin oxidoreductase; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; Pyruvate-flavodoxin oxidoreductase, EKR domain; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Pyruvate/ketoisovalerate oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
  
  
 0.902
Dde_3078
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.852
Dde_0473
TIGRFAM: Formate dehydrogenase, alpha subunit; KEGG: dps:DP0481 formate dehydrogenase, chain A; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; Molydopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 
 0.844
Dde_1110
TIGRFAM: Adenylylsulphate reductase, alpha subunit; KEGG: dvl:Dvul_2136 adenylylsulfate reductase subunit alpha.
  
 
 0.809
Dde_1257
TIGRFAM: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; KEGG: dma:DMR_34280 fumarate reductase flavoprotein subunit; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal.
  
 
 0.809
Dde_0475
Fe-only hydrogenase, large & small subunits, cytoplasmic; SMART: Iron hydrogenase, small subunit-like; TIGRFAM: Iron hydrogenase, subset; KEGG: dps:DP0479 Fe-center hydrogenase, large subunit; PFAM: Iron hydrogenase, large subunit, C-terminal; Iron hydrogenase, small subunit-like; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup.
  
 
 0.767
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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