STRINGSTRING
Dde_1336 Dde_1336 Dde_1339 Dde_1339 lolD lolD Dde_0731 Dde_0731 Dde_1340 Dde_1340 Dde_0826 Dde_0826 Dde_0412 Dde_0412 Dde_0825 Dde_0825 Dde_1335 Dde_1335 Dde_0733 Dde_0733 Dde_0962 Dde_0962
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_1336PFAM: Protein of unknown function DUF214, permase predicted; KEGG: dvm:DvMF_2954 protein of unknown function DUF214. (454 aa)    
Predicted Functional Partners:
Dde_1339
Phosphonate-transporting ATPase; PFAM: ABC transporter-like; KEGG: dvm:DvMF_2955 ABC transporter related; SMART: ATPase, AAA+ type, core.
 
 0.994
lolD
Phosphonate-transporting ATPase; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
 0.957
Dde_0731
Phosphonate-transporting ATPase; PFAM: ABC transporter-like; KEGG: das:Daes_0605 ABC transporter-like protein; SMART: ATPase, AAA+ type, core.
 
 0.952
Dde_1340
KEGG: dvl:Dvul_0795 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.920
Dde_0826
Phosphonate-transporting ATPase; PFAM: ABC transporter-like; KEGG: dvm:DvMF_0697 ABC transporter related; SMART: ATPase, AAA+ type, core.
 
 0.910
Dde_0412
Polyamine-transporting ATPase; PFAM: ABC transporter-like; KEGG: dvm:DvMF_2221 ABC transporter related; SMART: ATPase, AAA+ type, core.
 
 0.898
Dde_0825
PFAM: Biotin/lipoyl attachment; KEGG: dvm:DvMF_0696 secretion protein HlyD family protein.
 
  
 0.839
Dde_1335
PFAM: Protein of unknown function DUF214, permase predicted; KEGG: dvm:DvMF_2953 protein of unknown function DUF214.
 
    
0.836
Dde_0733
PFAM: Protein of unknown function DUF214, permase predicted; KEGG: das:Daes_0604 hypothetical protein.
 
  
 0.832
Dde_0962
KEGG: dau:Daud_2100 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.754
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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