STRINGSTRING
Dde_1361 Dde_1361 Dde_1196 Dde_1196 fliW fliW Dde_1360 Dde_1360 Dde_0281 Dde_0281 Dde_2415 Dde_2415 Dde_1433 Dde_1433 Dde_1714 Dde_1714 Dde_0381 Dde_0381 Dde_1359 Dde_1359 Dde_1117 Dde_1117
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_1361PFAM: Protein of unknown function DUF342; KEGG: das:Daes_0742 hypothetical protein. (653 aa)    
Predicted Functional Partners:
Dde_1196
PFAM: CheC-like protein; KEGG: das:Daes_0677 CheC domain-containing protein.
  
     0.642
fliW
Flagellar assembly factor FliW; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.
 
     0.642
Dde_1360
Multi-sensor hybrid histidine kinase; TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; GAF; PAS fold-4; Signal transduction response regulator, receiver region; KEGG: dvu:DVU2412 sensory box histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; GAF; PAS; Signal transduction response regulator, receiver region.
       0.624
Dde_0281
PFAM: CheC-like protein; KEGG: dvl:Dvul_2679 chemotaxis protein CheX.
  
     0.612
Dde_2415
PFAM: Protein of unknown function DUF115; KEGG: dvm:DvMF_3113 protein of unknown function DUF115.
  
    0.561
Dde_1433
PFAM: Glycosyl transferase, family 9; KEGG: dvm:DvMF_3035 glycosyl transferase family 9.
   
    0.493
Dde_1714
PFAM: Glycosyl transferase, family 9; KEGG: dvm:DvMF_0249 glycosyl transferase family 9.
  
    0.426
Dde_0381
PFAM: Signal recognition particle, SRP54 subunit, GTPase; KEGG: dvm:DvMF_2013 flagellar biosynthesis protein FlhF, putative.
 
   
 0.420
Dde_1359
KEGG: dvm:DvMF_2985 radical SAM domain protein; PFAM: Radical SAM N-terminal; SMART: Elongator protein 3/MiaB/NifB.
       0.418
Dde_1117
PFAM: Glycosyl transferase, family 2; KEGG: dvu:DVU4019 hypothetical protein.
  
     0.412
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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