STRINGSTRING
lptD lptD Dde_1769 Dde_1769 Dde_3632 Dde_3632 bamA bamA bamD bamD Dde_2037 Dde_2037 Dde_1948 Dde_1948 Dde_0121 Dde_0121 Dde_1956 Dde_1956 Dde_1466 Dde_1466 Dde_2117 Dde_2117
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lptDOrganic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. (777 aa)    
Predicted Functional Partners:
Dde_1769
PFAM: OstA-like protein; KEGG: dvm:DvMF_0429 OstA family protein.
 
 
 0.944
Dde_3632
KEGG: dvm:DvMF_2360 Tol-Pal system beta propeller repeat protein TolB.
 
  
 0.858
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
  
 0.850
bamD
Outer membrane assembly lipoprotein YfiO; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
  
 0.827
Dde_2037
SurA domain-containing protein; PFAM: SurA N-terminal; KEGG: dvm:DvMF_0287 SurA domain protein.
 
  
 0.825
Dde_1948
PFAM: Permease YjgP/YjgQ, predicted; KEGG: dvm:DvMF_0376 permease YjgP/YjgQ family protein.
 
  
 0.718
Dde_0121
KEGG: dvm:DvMF_2025 hypothetical protein.
  
     0.717
Dde_1956
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
   
 0.707
Dde_1466
KEGG: dvm:DvMF_3121 putative lipoprotein.
  
     0.693
Dde_2117
Tetratricopeptide TPR_2 repeat-containing protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; Tetratricopeptide TPR-4; KEGG: dvm:DvMF_0478 tetratricopeptide TPR_2 repeat protein.
 
  
 0.690
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.