node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Dde_0039 | priA | Dde_0039 | Dde_1519 | Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.710 |
Dde_1409 | Dde_1545 | Dde_1409 | Dde_1545 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | KEGG: dvm:DvMF_0813 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding. | 0.759 |
Dde_1409 | Dde_2715 | Dde_1409 | Dde_2715 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | KEGG: dvm:DvMF_1134 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1. | 0.540 |
Dde_1409 | pheT | Dde_1409 | Dde_2634 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; KEGG: dvl:Dvul_0712 phenylalanyl-tRNA synthetase subunit beta. | 0.477 |
Dde_1409 | priA | Dde_1409 | Dde_1519 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.642 |
Dde_1518 | Dde_1520 | Dde_1518 | Dde_1520 | TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; KEGG: dvl:Dvul_1782 UTP-glucose-1-phosphate uridylyltransferase GalU; PFAM: Nucleotidyl transferase. | KEGG: dvm:DvMF_0062 hypothetical protein. | 0.657 |
Dde_1518 | glmM | Dde_1518 | Dde_1517 | TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; KEGG: dvl:Dvul_1782 UTP-glucose-1-phosphate uridylyltransferase GalU; PFAM: Nucleotidyl transferase. | Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family. | 0.798 |
Dde_1518 | priA | Dde_1518 | Dde_1519 | TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; KEGG: dvl:Dvul_1782 UTP-glucose-1-phosphate uridylyltransferase GalU; PFAM: Nucleotidyl transferase. | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.757 |
Dde_1520 | Dde_1518 | Dde_1520 | Dde_1518 | KEGG: dvm:DvMF_0062 hypothetical protein. | TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; KEGG: dvl:Dvul_1782 UTP-glucose-1-phosphate uridylyltransferase GalU; PFAM: Nucleotidyl transferase. | 0.657 |
Dde_1520 | glmM | Dde_1520 | Dde_1517 | KEGG: dvm:DvMF_0062 hypothetical protein. | Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family. | 0.564 |
Dde_1520 | priA | Dde_1520 | Dde_1519 | KEGG: dvm:DvMF_0062 hypothetical protein. | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.711 |
Dde_1545 | Dde_1409 | Dde_1545 | Dde_1409 | KEGG: dvm:DvMF_0813 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | 0.759 |
Dde_1545 | Dde_2715 | Dde_1545 | Dde_2715 | KEGG: dvm:DvMF_0813 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding. | KEGG: dvm:DvMF_1134 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1. | 0.716 |
Dde_1545 | mutS | Dde_1545 | Dde_1976 | KEGG: dvm:DvMF_0813 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.467 |
Dde_1545 | pheT | Dde_1545 | Dde_2634 | KEGG: dvm:DvMF_0813 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding. | TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; KEGG: dvl:Dvul_0712 phenylalanyl-tRNA synthetase subunit beta. | 0.552 |
Dde_1545 | priA | Dde_1545 | Dde_1519 | KEGG: dvm:DvMF_0813 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding. | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.874 |
Dde_2715 | Dde_1409 | Dde_2715 | Dde_1409 | KEGG: dvm:DvMF_1134 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | 0.540 |
Dde_2715 | Dde_1545 | Dde_2715 | Dde_1545 | KEGG: dvm:DvMF_1134 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1. | KEGG: dvm:DvMF_0813 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding. | 0.716 |
Dde_2715 | fmt | Dde_2715 | Dde_0014 | KEGG: dvm:DvMF_1134 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.418 |
Dde_2715 | mutS | Dde_2715 | Dde_1976 | KEGG: dvm:DvMF_1134 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.580 |