STRINGSTRING
Dde_1560 Dde_1560 Dde_1559 Dde_1559 Dde_1561 Dde_1561 Dde_3426 Dde_3426 Dde_1562 Dde_1562 Dde_1941 Dde_1941 Dde_1563 Dde_1563 Dde_3702 Dde_3702 Dde_1556 Dde_1556 Dde_1892 Dde_1892 Dde_2349 Dde_2349
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Dde_1560Regulatory protein MarR; PFAM: HTH transcriptional regulator, MarR; KEGG: rle:RL3156 MarR family transcriptional regulatory protein. (151 aa)    
Predicted Functional Partners:
Dde_1559
KEGG: rhi:NGR_c27290 hypothetical protein.
 
     0.831
Dde_1561
Regulatory protein TetR; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: das:Daes_0017 regulatory protein TetR.
 
   
 0.616
Dde_3426
AAA-4 family protein; PFAM: ATPase associated with various cellular activities, AAA-4; KEGG: tme:Tmel_1088 putative transcriptional regulator.
  
     0.561
Dde_1562
TIGRFAM: Secretion protein HlyD; KEGG: dsa:Desal_3803 efflux transporter RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
 0.528
Dde_1941
KEGG: mgm:Mmc1_3271 PAS/PAC sensor hybrid histidine kinase; PFAM: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like.
  
  
 0.517
Dde_1563
PFAM: Acriflavin resistance protein; KEGG: dsa:Desal_3804 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
     
 0.514
Dde_3702
KEGG: dma:DMR_26460 AraC family transcriptional regulator; PFAM: Bacterial transcription activator, effector binding; Helix-turn-helix, AraC type; SMART: Bacterial transcription activator, effector binding; Helix-turn-helix, AraC domain.
  
  
 0.428
Dde_1556
KEGG: dsa:Desal_2649 thiamine biosynthesis protein ThiH; TIGRFAM: Thiazole biosynthesis ThiH; PFAM: Biotin/thiamin synthesis-associated protein; Radical SAM.
  
    0.425
Dde_1892
Regulatory protein TetR; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: cwo:Cwoe_4876 transcriptional regulator, TetR family.
  
   
 0.425
Dde_2349
Regulatory protein TetR; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: atu:Atu2320 TetR family transcriptional regulator.
  
   
 0.425
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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