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xerC xerC Dde_1583 Dde_1583 Dde_1584 Dde_1584 Dde_1582 Dde_1582 Dde_1581 Dde_1581 Dde_3398 Dde_3398 Dde_1955 Dde_1955 topA topA recR recR Dde_0029 Dde_0029 cpoB cpoB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
xerCIntegrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (332 aa)    
Predicted Functional Partners:
Dde_1583
Putative signal transduction protein; KEGG: dvm:DvMF_0769 metal dependent phosphohydrolase; TIGRFAM: HDIG; PFAM: Metal-dependent hydrolase HDOD.
     
 0.805
Dde_1584
KEGG: das:Daes_1862 diguanylate cyclase; PFAM: Signal transduction response regulator, receiver region; Diguanylate cyclase, predicted; SMART: Signal transduction response regulator, receiver region.
     
 0.805
Dde_1582
KEGG: dvm:DvMF_0770 hypothetical protein.
       0.765
Dde_1581
KEGG: das:Daes_1865 DNA protecting protein DprA; TIGRFAM: DNA recombination-mediator protein A; PFAM: DNA recombination-mediator protein A.
 
   
 0.763
Dde_3398
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: dma:DMR_34440 site-specific recombinase; Belongs to the 'phage' integrase family.
  
   
 0.740
Dde_1955
PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; KEGG: dvl:Dvul_1420 cell division FtsK/SpoIIIE.
 
   
 0.669
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
 
  
 0.616
recR
Recombination protein recR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
  
   
 0.571
Dde_0029
TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: dvm:DvMF_2045 ParB-like partition protein; SMART: ParB-like nuclease; Belongs to the ParB family.
 
  
 0.568
cpoB
Tol-pal system protein YbgF; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
       0.563
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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