STRINGSTRING
Dde_1614 Dde_1614 Dde_1615 Dde_1615 Dde_1616 Dde_1616 Dde_4025 Dde_4025 Dde_1244 Dde_1244 Dde_0749 Dde_0749 Dde_1617 Dde_1617 Dde_1542 Dde_1542 Dde_1546 Dde_1546 Dde_2579 Dde_2579 Dde_3327 Dde_3327
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Dde_1614KEGG: dvl:Dvul_0512 regulatory protein GntR, HTH; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR. (224 aa)    
Predicted Functional Partners:
Dde_1615
KEGG: dvl:Dvul_0510 amino acid transporter, AAT family.
 
     0.839
Dde_1616
KEGG: dvl:Dvul_0509 metallo-beta-lactamase family protein.
 
     0.785
Dde_4025
KEGG: dvl:Dvul_0511 hypothetical protein.
       0.773
Dde_1244
KEGG: das:Daes_2494 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal.
  
     0.765
Dde_0749
KEGG: dvm:DvMF_1205 GntR domain protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR.
  
     0.760
Dde_1617
PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; KEGG: dvu:DVU2805 P47K family cobalamin synthesis protein.
 
     0.719
Dde_1542
KEGG: dvm:DvMF_0816 acetyl-CoA carboxylase; PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region.
  
  
 0.649
Dde_1546
Transcriptional regulator, IclR family; KEGG: bpa:BPP4398 transcriptional regulator; PFAM: Transcriptional regulator IclR, N-terminal; Transcriptional regulator IclR, C-terminal; SMART: Transcriptional regulator IclR, N-terminal.
 
  
 0.527
Dde_2579
KEGG: dsa:Desal_1386 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR.
 
  
 0.523
Dde_3327
Transcriptional regulator, GntR family with UTRA sensor domain-containing protein; TIGRFAM: Phosphonate C-P lyase system, transcriptional regulator PhnF; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; KEGG: dba:Dbac_0812 phophonate C-P lyase system transcriptional regulator PhnF, GntR family; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR.
  
  
 0.489
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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