STRINGSTRING
Dde_1631 Dde_1631 Dde_1941 Dde_1941 Dde_1697 Dde_1697 Dde_1015 Dde_1015 Dde_1686 Dde_1686 Dde_1628 Dde_1628 Dde_0257 Dde_0257 Dde_1360 Dde_1360 Dde_2769 Dde_2769 Dde_0370 Dde_0370 Dde_3022 Dde_3022
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Dde_1631TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; PAS fold; KEGG: das:Daes_1286 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; PAS; PAC motif; Signal transduction response regulator, receiver region. (561 aa)    
Predicted Functional Partners:
Dde_1941
KEGG: mgm:Mmc1_3271 PAS/PAC sensor hybrid histidine kinase; PFAM: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like.
 
 0.969
Dde_1697
Multi-sensor hybrid histidine kinase; KEGG: dma:DMR_25470 two-component hybrid sensor and regulator; PFAM: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoaccep [...]
 
 0.961
Dde_1015
Histidine kinase; KEGG: met:M446_5170 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region.
 
 
 0.958
Dde_1686
Hpt domain protein; PFAM: Signal transduction histidine kinase, phosphotransfer (Hpt) region; KEGG: dvm:DvMF_0217 Hpt protein.
  
 
 0.952
Dde_1628
Diguanylate cyclase/phosphodiesterase with CBS domains; TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Cystathionine beta-synthase, core; Diguanylate cyclase, predicted; KEGG: dvm:DvMF_0617 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Cystathionine beta-synthase, core.
 
 
 0.943
Dde_0257
KEGG: dvl:Dvul_0331 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-4; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAC motif.
 
 0.920
Dde_1360
Multi-sensor hybrid histidine kinase; TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; GAF; PAS fold-4; Signal transduction response regulator, receiver region; KEGG: dvu:DVU2412 sensory box histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; GAF; PAS; Signal transduction response regulator, receiver region.
 
 0.916
Dde_2769
Multi-sensor hybrid histidine kinase; TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; PAS fold-3; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: sfu:Sfum_2304 multi-sensor hybrid histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; PAS; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain.
 
0.909
Dde_0370
Multi-sensor hybrid histidine kinase; TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; PAS fold; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: dvm:DvMF_2273 PAS/PAC sensor hybrid histidine kinase; SMART: Signal transduction response regulator, receiver region; PAS; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; ATP-binding region, ATPase-like.
 
 
0.908
Dde_3022
TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: dsa:Desal_0927 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted.
 
 
0.901
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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