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Dde_1741 Dde_1741 Dde_1742 Dde_1742 Dde_2924 Dde_2924 Dde_3431 Dde_3431 Dde_1885 Dde_1885 Dde_0935 Dde_0935 Dde_1739 Dde_1739 Dde_3394 Dde_3394 Dde_3580 Dde_3580 Dde_3386 Dde_3386
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_1741Prophage antirepressor; PFAM: BRO, N-terminal; KEGG: bbp:BBPR_0883 phage antirepressor protein. (184 aa)    
Predicted Functional Partners:
Dde_1742
PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: noc:Noc_2927 type III restriction enzyme, res subunit; SMART: DEAD-like helicase, N-terminal.
  
    0.596
Dde_2924
ERF family protein; PFAM: ERF; KEGG: dvu:DVU2032 ERF family protein.
  
    0.532
Dde_3431
ERF family protein; PFAM: ERF; KEGG: dvu:DVU2032 ERF family protein.
  
    0.532
Dde_1885
KEGG: dly:Dehly_1653 hypothetical protein.
 
     0.468
Dde_0935
KEGG: dly:Dehly_1653 hypothetical protein.
 
     0.459
Dde_1739
PFAM: Phage P22, antirepressor protein, N-terminal; KEGG: lhk:LHK_01530 antirepressor protein.
       0.449
Dde_3394
KEGG: tcx:Tcr_0692 hypothetical protein.
 
  
 0.438
Dde_3580
KEGG: dvm:DvMF_2218 lytic transglycosylase catalytic; PFAM: Lytic transglycosylase-like, catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup.
     
 0.425
Dde_3386
KEGG: aco:Amico_1111 phage tail tape measure protein, TP901 family; TIGRFAM: Phage tail tape measure protein TP901, core region; PFAM: Phage tail tape measure protein TP901, core region.
 
   
 0.414
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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