STRINGSTRING
Dde_1742 Dde_1742 Dde_1747 Dde_1747 Dde_1748 Dde_1748 Dde_1741 Dde_1741 Dde_0779 Dde_0779
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Dde_1742PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: noc:Noc_2927 type III restriction enzyme, res subunit; SMART: DEAD-like helicase, N-terminal. (990 aa)    
Predicted Functional Partners:
Dde_1747
KEGG: nth:Nther_0363 hypothetical protein.
 
     0.805
Dde_1748
Helicase domain-containing protein; KEGG: dat:HRM2_p00390 putative DNA/RNA-dependent helicase, SNF II family domain protein; PFAM: DNA/RNA helicase, C-terminal; SNF2-related; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal.
 
    0.801
Dde_1741
Prophage antirepressor; PFAM: BRO, N-terminal; KEGG: bbp:BBPR_0883 phage antirepressor protein.
  
    0.596
Dde_0779
KEGG: gwc:GWCH70_2069 SNF2-related protein; PFAM: DNA/RNA helicase, C-terminal; SNF2-related; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal.
 
    0.492
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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