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hpf hpf Dde_1773 Dde_1773 rpsU rpsU rpmC rpmC rpsI rpsI rpmA rpmA rpsB rpsB rplI rplI rpsF rpsF rpsP rpsP rplO rplO
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hpfSigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (180 aa)    
Predicted Functional Partners:
Dde_1773
Putative PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; KEGG: das:Daes_1477 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2.
 
  
 0.945
rpsU
TIGRFAM: Ribosomal protein S21; HAMAP: Ribosomal protein S21; KEGG: dvm:DvMF_0498 30S ribosomal protein S21; PFAM: Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.888
rpmC
KEGG: dvm:DvMF_0087 50S ribosomal protein L29; TIGRFAM: Ribosomal protein L29; PFAM: Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
 
 
 0.885
rpsI
PFAM: Ribosomal protein S9; KEGG: dvm:DvMF_0970 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.876
rpmA
KEGG: drt:Dret_2181 50S ribosomal protein L27; TIGRFAM: Ribosomal protein L27; PFAM: Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.875
rpsB
Ribosomal protein S2; KEGG: dvm:DvMF_2924 30S ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
  
 
   0.871
rplI
50S ribosomal protein L9; Binds to the 23S rRNA.
  
   0.871
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
 
   0.871
rpsP
KEGG: dvl:Dvul_2142 30S ribosomal protein S16; TIGRFAM: Ribosomal protein S16; PFAM: Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
    
 
 0.870
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
    
 
 0.870
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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