STRINGSTRING
Dde_1788 Dde_1788 Dde_0600 Dde_0600 Dde_1789 Dde_1789 Dde_0598 Dde_0598 Dde_1218 Dde_1218 Dde_2782 Dde_2782 Dde_2424 Dde_2424 Dde_2303 Dde_2303 Dde_0306 Dde_0306 Dde_0750 Dde_0750 Dde_0048 Dde_0048
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Dde_1788PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: sat:SYN_02087 putative cytoplasmic protein. (151 aa)    
Predicted Functional Partners:
Dde_0600
KEGG: dsa:Desal_2372 hypothetical protein.
  
     0.621
Dde_1789
PFAM: Phosphoadenosine phosphosulphate reductase; KEGG: dvm:DvMF_0181 phosphoadenosine phosphosulfate reductase.
       0.584
Dde_0598
PFAM: Protein of unknown function DUF81; KEGG: dsa:Desal_2371 hypothetical protein.
  
     0.528
Dde_1218
KEGG: dvl:Dvul_2289 ferredoxin-dependent glutamate synthase.
  
     0.467
Dde_2782
PFAM: Cytochrome c assembly protein, transmembrane region; KEGG: dba:Dbac_1909 cytochrome c biogenesis protein transmembrane region.
  
     0.458
Dde_2424
PFAM: Protein of unknown function DUF6, transmembrane; KEGG: dvm:DvMF_3106 protein of unknown function DUF6 transmembrane.
 
     0.452
Dde_2303
PFAM: Cupin 2, conserved barrel; KEGG: dma:DMR_35390 hypothetical protein.
 
    0.445
Dde_0306
Redoxin domain protein; PFAM: Redoxin; KEGG: dvu:DVU3076 hypothetical protein.
 
     0.422
Dde_0750
(S)-2-hydroxy-acid oxidase; KEGG: dvm:DvMF_1204 FMN-dependent alpha-hydroxy acid dehydrogenase; PFAM: FMN-dependent dehydrogenase.
  
    0.410
Dde_0048
PFAM: UspA; KEGG: dba:Dbac_0701 UspA domain protein.
 
  
 0.400
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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