STRINGSTRING
Dde_1890 Dde_1890 Dde_1889 Dde_1889 Dde_4032 Dde_4032 Dde_1888 Dde_1888 Dde_1887 Dde_1887 Dde_1891 Dde_1891 Dde_1884 Dde_1884 Dde_4031 Dde_4031 Dde_1885 Dde_1885 Dde_1886 Dde_1886
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_1890KEGG: das:Daes_1620 hypothetical protein. (182 aa)    
Predicted Functional Partners:
Dde_1889
KEGG: geb:GM18_2954 phage tail sheath protein.
       0.770
Dde_4032
KEGG: dly:Dehly_1658 hypothetical protein.
       0.770
Dde_1888
PFAM: Conserved hypothetical protein CHP02241, phage tail region protein; KEGG: sfu:Sfum_3816 hypothetical protein.
       0.741
Dde_1887
KEGG: das:Daes_1624 hypothetical protein.
       0.713
Dde_1891
PFAM: Metallophosphoesterase; KEGG: dol:Dole_0975 metallophosphoesterase.
       0.520
Dde_1884
KEGG: dly:Dehly_1652 hypothetical protein.
       0.470
Dde_4031
KEGG: dbr:Deba_1795 hypothetical protein.
       0.470
Dde_1885
KEGG: dly:Dehly_1653 hypothetical protein.
       0.466
Dde_1886
KEGG: sfu:Sfum_3818 TP901 family phage tail tape measure protein; TIGRFAM: Phage tail tape measure protein TP901, core region; PFAM: Phage tail tape measure protein TP901, core region.
       0.466
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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