STRINGSTRING
Dde_1903 Dde_1903 Dde_1904 Dde_1904 Dde_1902 Dde_1902 Dde_1899 Dde_1899 Dde_1900 Dde_1900 Dde_1901 Dde_1901 Dde_4034 Dde_4034 Dde_1905 Dde_1905 Dde_1906 Dde_1906 Dde_1907 Dde_1907 Dde_1908 Dde_1908
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_1903KEGG: sfu:Sfum_3807 hypothetical protein. (120 aa)    
Predicted Functional Partners:
Dde_1904
KEGG: dbr:Deba_1816 site-specific DNA-methyltransferase (adenine-specific); PFAM: D12 class N6 adenine-specific DNA methyltransferase.
       0.813
Dde_1902
KEGG: dbr:Deba_1814 hypothetical protein.
       0.742
Dde_1899
KEGG: das:Daes_1619 hypothetical protein.
       0.683
Dde_1900
KEGG: geb:GM18_2959 hypothetical protein.
       0.683
Dde_1901
KEGG: geb:GM18_2960 hypothetical protein.
       0.683
Dde_4034
KEGG: geb:GM18_2958 hypothetical protein.
       0.683
Dde_1905
KEGG: geb:GM18_2964 hypothetical protein.
       0.539
Dde_1906
KEGG: sfu:Sfum_3804 hypothetical protein.
       0.539
Dde_1907
KEGG: geb:GM18_2966 phage head morphogenesis protein, SPP1 gp7 family; TIGRFAM: Phage putative head morphogenesis protein, SPP1 gp7; PFAM: Phage putative head morphogenesis protein, SPP1 gp7.
       0.539
Dde_1908
KEGG: dbr:Deba_1820 hypothetical protein.
       0.538
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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