STRINGSTRING
Dde_1956 Dde_1956 Dde_1366 Dde_1366 Dde_1370 Dde_1370 Dde_1955 Dde_1955 Dde_0733 Dde_0733 Dde_0412 Dde_0412 Dde_0731 Dde_0731 lolD lolD Dde_0827 Dde_0827 bamD bamD Dde_0826 Dde_0826
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Score
Dde_1956Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). (224 aa)    
Predicted Functional Partners:
Dde_1366
KEGG: dvm:DvMF_2994 lipoprotein releasing system, transmembrane protein, LolC/E family; TIGRFAM: Lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: Protein of unknown function DUF214, permase predicted.
 
 
 
 0.888
Dde_1370
Cell wall hydrolase/autolysin; KEGG: dsa:Desal_3576 N-acetylmuramoyl-L-alanine amidase; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic.
 
 
 0.845
Dde_1955
PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; KEGG: dvl:Dvul_1420 cell division FtsK/SpoIIIE.
  
  
 0.838
Dde_0733
PFAM: Protein of unknown function DUF214, permase predicted; KEGG: das:Daes_0604 hypothetical protein.
   
 
 0.813
Dde_0412
Polyamine-transporting ATPase; PFAM: ABC transporter-like; KEGG: dvm:DvMF_2221 ABC transporter related; SMART: ATPase, AAA+ type, core.
   
 
 0.811
Dde_0731
Phosphonate-transporting ATPase; PFAM: ABC transporter-like; KEGG: das:Daes_0605 ABC transporter-like protein; SMART: ATPase, AAA+ type, core.
   
 
 0.811
lolD
Phosphonate-transporting ATPase; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
   
 
 0.811
Dde_0827
PFAM: Protein of unknown function DUF214, permase predicted; KEGG: dvl:Dvul_3083 hypothetical protein.
   
 
 0.792
bamD
Outer membrane assembly lipoprotein YfiO; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
   
 0.733
Dde_0826
Phosphonate-transporting ATPase; PFAM: ABC transporter-like; KEGG: dvm:DvMF_0697 ABC transporter related; SMART: ATPase, AAA+ type, core.
   
 
 0.721
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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