rpsT protein (Desulfovibrio alaskensis) - STRING interaction network

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rpsT

30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. (87 aa)

Predicted Functional Partners:

rpmB

0.990

rplM

0.989

rplU

0.989

rpmF

0.989

rpsU

0.988

rpsO

0.988

rpsP

0.987

rpmE

0.987

rpmA

0.986

rpsI

0.984

Your Current Organism:

Desulfovibrio alaskensis

NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplM	rplU	Dde_2607	Dde_2692	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.990
rplM	rpmA	Dde_2607	Dde_2691	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	KEGG: drt:Dret_2181 50S ribosomal protein L27; TIGRFAM: Ribosomal protein L27; PFAM: Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.993
rplM	rpmB	Dde_2607	Dde_2425	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	KEGG: dvl:Dvul_1846 50S ribosomal protein L28; TIGRFAM: Ribosomal protein L28; PFAM: Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.987
rplM	rpmE	Dde_2607	Dde_2982	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L31; Binds the 23S rRNA.	0.985
rplM	rpmF	Dde_2607	Dde_4007	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	TIGRFAM: Ribosomal protein L32p; HAMAP: Ribosomal protein L32p; KEGG: dvl:Dvul_1848 50S ribosomal protein L32; PFAM: Ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family.	0.986
rplM	rpsI	Dde_2607	Dde_2608	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: Ribosomal protein S9; KEGG: dvm:DvMF_0970 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
rplM	rpsO	Dde_2607	Dde_3166	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.993
rplM	rpsP	Dde_2607	Dde_1099	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	KEGG: dvl:Dvul_2142 30S ribosomal protein S16; TIGRFAM: Ribosomal protein S16; PFAM: Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.990
rplM	rpsT	Dde_2607	Dde_2031	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.989
rplM	rpsU	Dde_2607	Dde_2056	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	TIGRFAM: Ribosomal protein S21; HAMAP: Ribosomal protein S21; KEGG: dvm:DvMF_0498 30S ribosomal protein S21; PFAM: Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.984
rplU	rplM	Dde_2692	Dde_2607	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.990
rplU	rpmA	Dde_2692	Dde_2691	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	KEGG: drt:Dret_2181 50S ribosomal protein L27; TIGRFAM: Ribosomal protein L27; PFAM: Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.998
rplU	rpmB	Dde_2692	Dde_2425	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	KEGG: dvl:Dvul_1846 50S ribosomal protein L28; TIGRFAM: Ribosomal protein L28; PFAM: Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.990
rplU	rpmE	Dde_2692	Dde_2982	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Ribosomal protein L31; Binds the 23S rRNA.	0.987
rplU	rpmF	Dde_2692	Dde_4007	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	TIGRFAM: Ribosomal protein L32p; HAMAP: Ribosomal protein L32p; KEGG: dvl:Dvul_1848 50S ribosomal protein L32; PFAM: Ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family.	0.989
rplU	rpsI	Dde_2692	Dde_2608	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	PFAM: Ribosomal protein S9; KEGG: dvm:DvMF_0970 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.991
rplU	rpsO	Dde_2692	Dde_3166	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.985
rplU	rpsP	Dde_2692	Dde_1099	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	KEGG: dvl:Dvul_2142 30S ribosomal protein S16; TIGRFAM: Ribosomal protein S16; PFAM: Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.991
rplU	rpsT	Dde_2692	Dde_2031	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.989
rplU	rpsU	Dde_2692	Dde_2056	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	TIGRFAM: Ribosomal protein S21; HAMAP: Ribosomal protein S21; KEGG: dvm:DvMF_0498 30S ribosomal protein S21; PFAM: Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.985

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