rtcB protein (Desulfovibrio alaskensis) - STRING interaction network

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rtcB

Protein of unknown function UPF0027; PFAM: Uncharacterized protein family UPF0027; KEGG: avn:Avin_46150 hypothetical protein; Belongs to the RtcB family. (478 aa)

Predicted Functional Partners:

Dde_2090

0.777

Dde_2088

0.580

Dde_0152

0.481

Dde_0341

0.481

Dde_2480

0.481

prfB

0.458

Dde_0036

0.455

Dde_1670

0.422

Dde_1446

0.413

Your Current Organism:

Desulfovibrio alaskensis

NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Dde_0036	rtcB	Dde_0036	Dde_2089	KEGG: dsa:Desal_3833 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein.	Protein of unknown function UPF0027; PFAM: Uncharacterized protein family UPF0027; KEGG: avn:Avin_46150 hypothetical protein; Belongs to the RtcB family.	0.455
Dde_0152	Dde_0341	Dde_0152	Dde_0341	KEGG: dvm:DvMF_2125 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; Belongs to the DEAD box helicase family.	KEGG: dvm:DvMF_2252 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; Belongs to the DEAD box helicase family.	0.917
Dde_0152	prfB	Dde_0152	Dde_1805	KEGG: dvm:DvMF_2125 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; Belongs to the DEAD box helicase family.	Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	0.634
Dde_0152	rtcB	Dde_0152	Dde_2089	KEGG: dvm:DvMF_2125 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; Belongs to the DEAD box helicase family.	Protein of unknown function UPF0027; PFAM: Uncharacterized protein family UPF0027; KEGG: avn:Avin_46150 hypothetical protein; Belongs to the RtcB family.	0.481
Dde_0341	Dde_0152	Dde_0341	Dde_0152	KEGG: dvm:DvMF_2252 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; Belongs to the DEAD box helicase family.	KEGG: dvm:DvMF_2125 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; Belongs to the DEAD box helicase family.	0.917
Dde_0341	prfB	Dde_0341	Dde_1805	KEGG: dvm:DvMF_2252 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; Belongs to the DEAD box helicase family.	Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	0.634
Dde_0341	rtcB	Dde_0341	Dde_2089	KEGG: dvm:DvMF_2252 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; Belongs to the DEAD box helicase family.	Protein of unknown function UPF0027; PFAM: Uncharacterized protein family UPF0027; KEGG: avn:Avin_46150 hypothetical protein; Belongs to the RtcB family.	0.481
Dde_1446	rtcB	Dde_1446	Dde_2089	Rhomboid family protein; PFAM: Peptidase S54, rhomboid; KEGG: dvm:DvMF_0913 rhomboid family protein.	Protein of unknown function UPF0027; PFAM: Uncharacterized protein family UPF0027; KEGG: avn:Avin_46150 hypothetical protein; Belongs to the RtcB family.	0.413
Dde_1670	rtcB	Dde_1670	Dde_2089	KEGG: drt:Dret_0731 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB.	Protein of unknown function UPF0027; PFAM: Uncharacterized protein family UPF0027; KEGG: avn:Avin_46150 hypothetical protein; Belongs to the RtcB family.	0.422
Dde_2088	Dde_2090	Dde_2088	Dde_2090	PFAM: Amino acid-binding ACT; KEGG: dvl:Dvul_1522 amino acid-binding ACT domain-containing protein.	PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; Molydopterin dinucleotide-binding region; KEGG: dvl:Dvul_1523 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.576
Dde_2088	rtcB	Dde_2088	Dde_2089	PFAM: Amino acid-binding ACT; KEGG: dvl:Dvul_1522 amino acid-binding ACT domain-containing protein.	Protein of unknown function UPF0027; PFAM: Uncharacterized protein family UPF0027; KEGG: avn:Avin_46150 hypothetical protein; Belongs to the RtcB family.	0.580
Dde_2090	Dde_2088	Dde_2090	Dde_2088	PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; Molydopterin dinucleotide-binding region; KEGG: dvl:Dvul_1523 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	PFAM: Amino acid-binding ACT; KEGG: dvl:Dvul_1522 amino acid-binding ACT domain-containing protein.	0.576
Dde_2090	rtcB	Dde_2090	Dde_2089	PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; Molydopterin dinucleotide-binding region; KEGG: dvl:Dvul_1523 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Protein of unknown function UPF0027; PFAM: Uncharacterized protein family UPF0027; KEGG: avn:Avin_46150 hypothetical protein; Belongs to the RtcB family.	0.777
Dde_2480	prfB	Dde_2480	Dde_1805	DEAD/DEAH box helicase domain protein; KEGG: dvu:DVU1982 ATP-dependent RNA helicase RhlE; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal.	Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	0.634
Dde_2480	rtcB	Dde_2480	Dde_2089	DEAD/DEAH box helicase domain protein; KEGG: dvu:DVU1982 ATP-dependent RNA helicase RhlE; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal.	Protein of unknown function UPF0027; PFAM: Uncharacterized protein family UPF0027; KEGG: avn:Avin_46150 hypothetical protein; Belongs to the RtcB family.	0.481
prfB	Dde_0152	Dde_1805	Dde_0152	Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	KEGG: dvm:DvMF_2125 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; Belongs to the DEAD box helicase family.	0.634
prfB	Dde_0341	Dde_1805	Dde_0341	Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	KEGG: dvm:DvMF_2252 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; Belongs to the DEAD box helicase family.	0.634
prfB	Dde_2480	Dde_1805	Dde_2480	Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	DEAD/DEAH box helicase domain protein; KEGG: dvu:DVU1982 ATP-dependent RNA helicase RhlE; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal.	0.634
prfB	rtcB	Dde_1805	Dde_2089	Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	Protein of unknown function UPF0027; PFAM: Uncharacterized protein family UPF0027; KEGG: avn:Avin_46150 hypothetical protein; Belongs to the RtcB family.	0.458
rtcB	Dde_0036	Dde_2089	Dde_0036	Protein of unknown function UPF0027; PFAM: Uncharacterized protein family UPF0027; KEGG: avn:Avin_46150 hypothetical protein; Belongs to the RtcB family.	KEGG: dsa:Desal_3833 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein.	0.455

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