STRINGSTRING
Dde_2123 Dde_2123 hslV hslV Dde_2122 Dde_2122 cysS cysS ispE ispE Dde_1998 Dde_1998 Dde_2120 Dde_2120 Dde_2119 Dde_2119 cmk cmk prs prs Dde_2117 Dde_2117
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_2123KEGG: drt:Dret_0554 Appr-1-p processing domain-containing protein; PFAM: Appr-1-p processing; SMART: Appr-1-p processing. (183 aa)    
Predicted Functional Partners:
hslV
20S proteasome A and B subunits; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
       0.779
Dde_2122
KEGG: dvm:DvMF_0483 peptidase M48 Ste24p; PFAM: Peptidase M48, Ste24p; Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat.
  
    0.773
cysS
SMART: Cysteinyl-tRNA synthetase, class Ia, DALR; TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; KEGG: dvl:Dvul_1554 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase, class Ia, N-terminal; Cysteinyl-tRNA synthetase, class Ia, DALR; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.752
ispE
4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
       0.747
Dde_1998
AAA ATPase central domain protein; KEGG: dvm:DvMF_0339 recombination factor protein RarA; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core.
      0.694
Dde_2120
TIGRFAM: Ribose 5-phosphate isomerase B; Ribose/galactose isomerase; KEGG: dvl:Dvul_1553 RpiB/LacA/LacB family sugar-phosphate isomerase; PFAM: Ribose/galactose isomerase.
       0.646
Dde_2119
Hypothetical protein.
       0.613
cmk
TIGRFAM: Cytidylate kinase; HAMAP: Cytidylate kinase; KEGG: dvm:DvMF_0909 cytidylate kinase; PFAM: Cytidylate kinase region.
 
      0.582
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
       0.545
Dde_2117
Tetratricopeptide TPR_2 repeat-containing protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; Tetratricopeptide TPR-4; KEGG: dvm:DvMF_0478 tetratricopeptide TPR_2 repeat protein.
       0.538
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.