node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Dde_0002 | Dde_0029 | Dde_0002 | Dde_0029 | SMART: DNA polymerase III, beta chain; TIGRFAM: DNA polymerase III, beta chain; KEGG: dvl:Dvul_0006 subunit beta; PFAM: DNA polymerase III, beta chain. | TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: dvm:DvMF_2045 ParB-like partition protein; SMART: ParB-like nuclease; Belongs to the ParB family. | 0.469 |
Dde_0002 | Dde_2393 | Dde_0002 | Dde_2393 | SMART: DNA polymerase III, beta chain; TIGRFAM: DNA polymerase III, beta chain; KEGG: dvl:Dvul_0006 subunit beta; PFAM: DNA polymerase III, beta chain. | PFAM: Single-stranded nucleic acid binding R3H; KEGG: dvm:DvMF_0887 single-stranded nucleic acid binding R3H domain protein. | 0.563 |
Dde_0002 | gyrA | Dde_0002 | Dde_0004 | SMART: DNA polymerase III, beta chain; TIGRFAM: DNA polymerase III, beta chain; KEGG: dvl:Dvul_0006 subunit beta; PFAM: DNA polymerase III, beta chain. | DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.840 |
Dde_0002 | metG | Dde_0002 | Dde_1594 | SMART: DNA polymerase III, beta chain; TIGRFAM: DNA polymerase III, beta chain; KEGG: dvl:Dvul_0006 subunit beta; PFAM: DNA polymerase III, beta chain. | Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.470 |
Dde_0002 | mnmG | Dde_0002 | Dde_1809 | SMART: DNA polymerase III, beta chain; TIGRFAM: DNA polymerase III, beta chain; KEGG: dvl:Dvul_0006 subunit beta; PFAM: DNA polymerase III, beta chain. | Glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | 0.590 |
Dde_0002 | rnpA | Dde_0002 | Dde_2396 | SMART: DNA polymerase III, beta chain; TIGRFAM: DNA polymerase III, beta chain; KEGG: dvl:Dvul_0006 subunit beta; PFAM: DNA polymerase III, beta chain. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.627 |
Dde_0002 | rsmG | Dde_0002 | Dde_2293 | SMART: DNA polymerase III, beta chain; TIGRFAM: DNA polymerase III, beta chain; KEGG: dvl:Dvul_0006 subunit beta; PFAM: DNA polymerase III, beta chain. | Glucose inhibited division protein; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | 0.615 |
Dde_0002 | yidC | Dde_0002 | Dde_2394 | SMART: DNA polymerase III, beta chain; TIGRFAM: DNA polymerase III, beta chain; KEGG: dvl:Dvul_0006 subunit beta; PFAM: DNA polymerase III, beta chain. | Membrane protein insertase, YidC/Oxa1 family; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. | 0.568 |
Dde_0029 | Dde_0002 | Dde_0029 | Dde_0002 | TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: dvm:DvMF_2045 ParB-like partition protein; SMART: ParB-like nuclease; Belongs to the ParB family. | SMART: DNA polymerase III, beta chain; TIGRFAM: DNA polymerase III, beta chain; KEGG: dvl:Dvul_0006 subunit beta; PFAM: DNA polymerase III, beta chain. | 0.469 |
Dde_0029 | mnmE | Dde_0029 | Dde_2392 | TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: dvm:DvMF_2045 ParB-like partition protein; SMART: ParB-like nuclease; Belongs to the ParB family. | tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.608 |
Dde_0029 | rsmG | Dde_0029 | Dde_2293 | TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: dvm:DvMF_2045 ParB-like partition protein; SMART: ParB-like nuclease; Belongs to the ParB family. | Glucose inhibited division protein; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | 0.806 |
Dde_2294 | rsmG | Dde_2294 | Dde_2293 | (Acyl-carrier-protein) S-malonyltransferase; KEGG: dvl:Dvul_1813 malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase. | Glucose inhibited division protein; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | 0.553 |
Dde_2393 | Dde_0002 | Dde_2393 | Dde_0002 | PFAM: Single-stranded nucleic acid binding R3H; KEGG: dvm:DvMF_0887 single-stranded nucleic acid binding R3H domain protein. | SMART: DNA polymerase III, beta chain; TIGRFAM: DNA polymerase III, beta chain; KEGG: dvl:Dvul_0006 subunit beta; PFAM: DNA polymerase III, beta chain. | 0.563 |
Dde_2393 | mnmE | Dde_2393 | Dde_2392 | PFAM: Single-stranded nucleic acid binding R3H; KEGG: dvm:DvMF_0887 single-stranded nucleic acid binding R3H domain protein. | tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.608 |
Dde_2393 | rnpA | Dde_2393 | Dde_2396 | PFAM: Single-stranded nucleic acid binding R3H; KEGG: dvm:DvMF_0887 single-stranded nucleic acid binding R3H domain protein. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.903 |
Dde_2393 | rsmG | Dde_2393 | Dde_2293 | PFAM: Single-stranded nucleic acid binding R3H; KEGG: dvm:DvMF_0887 single-stranded nucleic acid binding R3H domain protein. | Glucose inhibited division protein; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | 0.681 |
Dde_2393 | yidC | Dde_2393 | Dde_2394 | PFAM: Single-stranded nucleic acid binding R3H; KEGG: dvm:DvMF_0887 single-stranded nucleic acid binding R3H domain protein. | Membrane protein insertase, YidC/Oxa1 family; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. | 0.941 |
gyrA | Dde_0002 | Dde_0004 | Dde_0002 | DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | SMART: DNA polymerase III, beta chain; TIGRFAM: DNA polymerase III, beta chain; KEGG: dvl:Dvul_0006 subunit beta; PFAM: DNA polymerase III, beta chain. | 0.840 |
gyrA | metG | Dde_0004 | Dde_1594 | DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.831 |
gyrA | mnmG | Dde_0004 | Dde_1809 | DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | Glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | 0.469 |