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Dde_2419 Dde_2419 Dde_2420 Dde_2420 Dde_0215 Dde_0215 Dde_1487 Dde_1487 Dde_1486 Dde_1486 Dde_0337 Dde_0337 Dde_1679 Dde_1679 Dde_2368 Dde_2368 rpoZ rpoZ Dde_2369 Dde_2369 rplF rplF
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_2419KEGG: dvl:Dvul_1842 phosphoesterase, PA-phosphatase related; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase. (222 aa)    
Predicted Functional Partners:
Dde_2420
KEGG: dvl:Dvul_1843 glycosyl transferase family protein.
 
  
 0.899
Dde_0215
KEGG: dvm:DvMF_1927 glycosyl transferase family 2.
 
   
 0.757
Dde_1487
PFAM: Glycosyl transferase, family 2; KEGG: dvm:DvMF_3144 glycosyl transferase family 2.
 
   
 0.756
Dde_1486
PFAM: Glycosyl transferase, family 2; KEGG: dvm:DvMF_3143 glycosyl transferase family 2.
 
   
 0.739
Dde_0337
PFAM: Glycosyl transferase, family 2; KEGG: dvu:DVU3287 glycosyl transferase group 2 family protein.
 
   
 0.731
Dde_1679
KEGG: dvl:Dvul_1664 hypothetical protein.
  
     0.719
Dde_2368
KEGG: dvm:DvMF_2733 von Willebrand factor type A; PFAM: Protein of unknown function DUF2134, membrane; von Willebrand factor, type A; SMART: von Willebrand factor, type A.
  
     0.684
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.640
Dde_2369
TadE family protein; PFAM: TadE-like; KEGG: dvl:Dvul_1103 TadE family protein.
  
     0.595
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
 0.586
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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