node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Dde_1992 | nusA | Dde_1992 | Dde_3161 | PFAM: Inositol monophosphatase; KEGG: dvm:DvMF_0345 inositol-phosphate phosphatase. | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.817 |
Dde_1992 | nusB | Dde_1992 | Dde_2438 | PFAM: Inositol monophosphatase; KEGG: dvm:DvMF_0345 inositol-phosphate phosphatase. | NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.809 |
Dde_1992 | nusG | Dde_1992 | Dde_2991 | PFAM: Inositol monophosphatase; KEGG: dvm:DvMF_0345 inositol-phosphate phosphatase. | NusG antitermination factor; Participates in transcription elongation, termination and antitermination. | 0.860 |
Dde_1992 | rpoA | Dde_1992 | Dde_2231 | PFAM: Inositol monophosphatase; KEGG: dvm:DvMF_0345 inositol-phosphate phosphatase. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.697 |
Dde_1992 | rpoZ | Dde_1992 | Dde_0247 | PFAM: Inositol monophosphatase; KEGG: dvm:DvMF_0345 inositol-phosphate phosphatase. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.793 |
Dde_1992 | rpsD | Dde_1992 | Dde_2232 | PFAM: Inositol monophosphatase; KEGG: dvm:DvMF_0345 inositol-phosphate phosphatase. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.706 |
Dde_1992 | rpsJ | Dde_1992 | Dde_2258 | PFAM: Inositol monophosphatase; KEGG: dvm:DvMF_0345 inositol-phosphate phosphatase. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.724 |
Dde_2434 | nusB | Dde_2434 | Dde_2438 | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.834 |
Dde_2434 | ribBA | Dde_2434 | Dde_2436 | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.999 |
Dde_2434 | ribH | Dde_2434 | Dde_2437 | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. | 0.997 |
nusA | Dde_1992 | Dde_3161 | Dde_1992 | NusA antitermination factor; Participates in both transcription termination and antitermination. | PFAM: Inositol monophosphatase; KEGG: dvm:DvMF_0345 inositol-phosphate phosphatase. | 0.817 |
nusA | nusB | Dde_3161 | Dde_2438 | NusA antitermination factor; Participates in both transcription termination and antitermination. | NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.928 |
nusA | nusG | Dde_3161 | Dde_2991 | NusA antitermination factor; Participates in both transcription termination and antitermination. | NusG antitermination factor; Participates in transcription elongation, termination and antitermination. | 0.979 |
nusA | rpoA | Dde_3161 | Dde_2231 | NusA antitermination factor; Participates in both transcription termination and antitermination. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.991 |
nusA | rpoZ | Dde_3161 | Dde_0247 | NusA antitermination factor; Participates in both transcription termination and antitermination. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.936 |
nusA | rpsD | Dde_3161 | Dde_2232 | NusA antitermination factor; Participates in both transcription termination and antitermination. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.958 |
nusA | rpsJ | Dde_3161 | Dde_2258 | NusA antitermination factor; Participates in both transcription termination and antitermination. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.980 |
nusB | Dde_1992 | Dde_2438 | Dde_1992 | NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | PFAM: Inositol monophosphatase; KEGG: dvm:DvMF_0345 inositol-phosphate phosphatase. | 0.809 |
nusB | Dde_2434 | Dde_2438 | Dde_2434 | NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.834 |
nusB | nusA | Dde_2438 | Dde_3161 | NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.928 |