STRINGSTRING
acyP acyP Dde_2164 Dde_2164 Dde_3241 Dde_3241 ackA ackA Dde_3121 Dde_3121 Dde_0518 Dde_0518 Dde_2317 Dde_2317 Dde_2823 Dde_2823 acsA acsA Dde_2442 Dde_2442 lon-2 lon-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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[Homology]
Score
acyPPFAM: Acylphosphatase-like; KEGG: bts:Btus_1137 acylphosphatase. (68 aa)    
Predicted Functional Partners:
Dde_2164
PFAM: Acylphosphatase-like; KEGG: dsa:Desal_0646 acylphosphatase.
  
  
  0.915
Dde_3241
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.915
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
     
 0.910
Dde_3121
KEGG: bsu:BSU37960 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.906
Dde_0518
PFAM: Amidase; KEGG: mxa:MXAN_2852 amidase family protein; Belongs to the amidase family.
    
  0.905
Dde_2317
Butyrate--CoA ligase; KEGG: dvl:Dvul_0993 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase.
     
 0.900
Dde_2823
TIGRFAM: Acetate--CoA ligase; KEGG: dvm:DvMF_2783 acetate/CoA ligase; PFAM: AMP-dependent synthetase/ligase.
     
 0.900
acsA
acetate/CoA ligase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
     
 0.900
Dde_2442
KEGG: dvl:Dvul_1864 DNA repair protein RadC; TIGRFAM: DNA repair, RadC-like; PFAM: DNA repair, RadC-like; Belongs to the UPF0758 family.
       0.669
lon-2
Anti-sigma H sporulation factor, LonB; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.
       0.475
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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