STRINGSTRING
Dde_2581 Dde_2581 Dde_0276 Dde_0276 Dde_2582 Dde_2582 Dde_2580 Dde_2580
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_2581TIGRFAM: Pyridoxal phosphate-dependent deaminase; KEGG: dsa:Desal_1391 D-cysteine desulfhydrase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit. (333 aa)    
Predicted Functional Partners:
Dde_0276
Cystathionine beta-lyase; KEGG: dal:Dalk_4468 aminotransferase class I and II; PFAM: Aminotransferase, class I/II.
    
  0.907
Dde_2582
KEGG: dvl:Dvul_0603 endoribonuclease L-PSP; TIGRFAM: YjgF-like protein; PFAM: Endoribonuclease L-PSP.
  
    0.741
Dde_2580
PFAM: Na+/H+ antiporter NhaC-like; KEGG: dvl:Dvul_0605 Na+/H+ antiporter NhaC.
       0.525
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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