STRINGSTRING
Dde_2613 Dde_2613 Dde_2111 Dde_2111 Dde_1022 Dde_1022 Dde_1045 Dde_1045 Dde_2441 Dde_2441 Dde_3136 Dde_3136 Dde_2440 Dde_2440 Dde_1968 Dde_1968 Dde_0994 Dde_0994 Dde_1011 Dde_1011 Dde_2070 Dde_2070
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_2613KEGG: dvm:DvMF_0974 transcriptional regulator, MucR family. (156 aa)    
Predicted Functional Partners:
Dde_2111
MJ0042 family finger-like protein; TIGRFAM: Zinc finger/thioredoxin putative; KEGG: dvl:Dvul_1544 zinc finger-domain-containing protein.
  
     0.722
Dde_1022
KEGG: dvm:DvMF_2836 hypothetical protein.
  
     0.710
Dde_1045
Polypeptide-transport-associated domain protein FtsQ-type; Essential cell division protein.
  
     0.709
Dde_2441
KEGG: dvm:DvMF_3088 hypothetical protein.
  
     0.697
Dde_3136
PFAM: Protein of unknown function DUF721; KEGG: dvl:Dvul_2350 hypothetical protein.
  
     0.692
Dde_2440
KEGG: dvm:DvMF_3089 putative lipoprotein.
  
     0.686
Dde_1968
KEGG: dvm:DvMF_0363 TRASH domain protein.
  
     0.684
Dde_0994
KEGG: dvl:Dvul_2186 hypothetical protein.
  
     0.619
Dde_1011
KEGG: dvm:DvMF_2846 hypothetical protein.
  
     0.614
Dde_2070
Sporulation domain-containing protein; PFAM: Sporulation/cell division region, bacteria; KEGG: dvm:DvMF_0405 hypothetical protein.
  
     0.607
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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