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Dde_2783 Dde_2783 Dde_2782 Dde_2782 Dde_0882 Dde_0882 Dde_2781 Dde_2781 ybeY ybeY Dde_4043 Dde_4043 Dde_3426 Dde_3426 rpsQ rpsQ rplQ rplQ rplU rplU Dde_0722 Dde_0722
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Dde_2783KEGG: das:Daes_0509 rhodanese domain-containing protein. (93 aa)    
Predicted Functional Partners:
Dde_2782
PFAM: Cytochrome c assembly protein, transmembrane region; KEGG: dba:Dbac_1909 cytochrome c biogenesis protein transmembrane region.
 
     0.844
Dde_0882
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.659
Dde_2781
Thioredoxin domain-containing protein; PFAM: Thioredoxin domain; KEGG: das:Daes_0507 thioredoxin domain-containing protein.
 
   
 0.652
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
   
   0.624
Dde_4043
DGC domain protein; PFAM: DGC; KEGG: das:Daes_0506 DGC domain-containing protein.
 
     0.610
Dde_3426
AAA-4 family protein; PFAM: ATPase associated with various cellular activities, AAA-4; KEGG: tme:Tmel_1088 putative transcriptional regulator.
  
   
 0.607
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
   0.602
rplQ
KEGG: das:Daes_2227 50S ribosomal protein L17; TIGRFAM: Ribosomal protein L17; PFAM: Ribosomal protein L17.
  
   0.575
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
   0.565
Dde_0722
Xenobiotic-transporting ATPase., Beta-glucan-transporting ATPase; PFAM: ABC transporter-like; ABC transporter, transmembrane region; KEGG: sfu:Sfum_4031 ABC transporter-like protein; SMART: ATPase, AAA+ type, core.
  
   0.562
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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