STRINGSTRING
Dde_2799 Dde_2799 Dde_3386 Dde_3386 Dde_2798 Dde_2798 Dde_3382 Dde_3382
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_2799Phage regulatory protein, Rha family; KEGG: efa:EF2037 antirepressor, putative; TIGRFAM: Phage regulatory protein, Rha; PFAM: Phage regulatory protein, Rha-like. (204 aa)    
Predicted Functional Partners:
Dde_3386
KEGG: aco:Amico_1111 phage tail tape measure protein, TP901 family; TIGRFAM: Phage tail tape measure protein TP901, core region; PFAM: Phage tail tape measure protein TP901, core region.
 
     0.519
Dde_2798
PFAM: Heat shock protein Hsp20; KEGG: sfu:Sfum_2860 heat shock protein HSP20.
       0.480
Dde_3382
KEGG: gem:GM21_3662 hypothetical protein.
  
     0.417
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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