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Dde_2807 Dde_2807 Dde_2805 Dde_2805 Dde_2806 Dde_2806 rnpA rnpA Dde_0385 Dde_0385 Dde_3586 Dde_3586 Dde_0350 Dde_0350 Dde_2434 Dde_2434 Dde_1241 Dde_1241 Dde_3556 Dde_3556
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_2807PFAM: Staphylococcal nuclease (SNase-like); KEGG: vok:COSY_0067 nuclease. (178 aa)    
Predicted Functional Partners:
Dde_2805
Prophage antirepressor; PFAM: BRO, N-terminal; KEGG: amu:Amuc_1367 prophage antirepressor.
     
 0.821
Dde_2806
KEGG: dba:Dbac_0897 phage regulatory protein, Rha family; TIGRFAM: Phage regulatory protein, Rha; PFAM: Phage regulatory protein, Rha-like.
       0.737
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
   
    0.573
Dde_0385
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.430
Dde_3586
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.430
Dde_0350
SMART: ATPase, AAA+ type, core; TIGRFAM: Flagellar protein export ATPase, FliI; ATPase, type III secretion system, FliI/YscN; KEGG: dvl:Dvul_2671 flagellar protein export ATPase FliI; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain.
   
    0.424
Dde_2434
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
  
 0.422
Dde_1241
PFAM: Acyltransferase 3; KEGG: tfu:Tfu_1701 hypothetical protein.
   
  
 0.403
Dde_3556
PFAM: Acyltransferase 3; KEGG: pap:PSPA7_5981 putative O-antigen acetylase.
   
  
 0.403
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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