STRINGSTRING
Dde_2834 Dde_2834 Dde_2833 Dde_2833 Dde_1892 Dde_1892 purN purN Dde_1561 Dde_1561 Dde_1941 Dde_1941 Dde_0670 Dde_0670 Dde_2490 Dde_2490
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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[Homology]
Score
Dde_2834PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ppr:PBPRA2834 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (309 aa)    
Predicted Functional Partners:
Dde_2833
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dvm:DvMF_2771 lysine exporter protein (LysE/YggA).
 
   
 0.716
Dde_1892
Regulatory protein TetR; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: cwo:Cwoe_4876 transcriptional regulator, TetR family.
  
 
 
 0.673
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
       0.518
Dde_1561
Regulatory protein TetR; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: das:Daes_0017 regulatory protein TetR.
  
 
 
 0.497
Dde_1941
KEGG: mgm:Mmc1_3271 PAS/PAC sensor hybrid histidine kinase; PFAM: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like.
   
  
 0.414
Dde_0670
PFAM: Acriflavin resistance protein; KEGG: dsa:Desal_0071 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
     0.410
Dde_2490
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dsa:Desal_3556 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.408
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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