STRINGSTRING
Dde_2870 Dde_2870 Dde_2868 Dde_2868 Dde_2869 Dde_2869 Dde_1861 Dde_1861 Dde_1860 Dde_1860 Dde_2871 Dde_2871 Dde_3429 Dde_3429 Dde_2498 Dde_2498 Dde_3427 Dde_3427 Dde_2495 Dde_2495 Dde_2496 Dde_2496
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_2870KEGG: kpn:KPN_pKPN4p07084 hypothetical protein; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal. (1085 aa)    
Predicted Functional Partners:
Dde_2868
PFAM: DNA methylase, adenine-specific; KEGG: kpn:KPN_pKPN4p07086 putative type I restriction-modification system DNA methylase.
 
 
 0.986
Dde_2869
Restriction modification system DNA specificity domain-containing protein; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: pap:PSPA7_0076 type I restriction-modification system subunit S.
 
  
 0.977
Dde_1861
PFAM: DNA methylase, adenine-specific; KEGG: geb:GM18_2924 N-6 DNA methylase.
 
 
 0.942
Dde_1860
KEGG: geb:GM18_2923 restriction modification system DNA specificity domain-containing protein.
 
  
 0.904
Dde_2871
PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: kpn:KPN_pKPN4p07083 putative transposase.
 
     0.833
Dde_3429
TIGRFAM: Restriction endonuclease, type I, EcoRI, M subunit; KEGG: dbr:Deba_2542 type I restriction-modification system, M subunit; PFAM: DNA methylase, adenine-specific.
 
 
 0.784
Dde_2498
Site-specific DNA-methyltransferase (adenine-specific); KEGG: ppd:Ppro_0353 N-6 DNA methylase; PFAM: DNA methylase, adenine-specific.
  
 
 0.754
Dde_3427
KEGG: dbr:Deba_2540 site-specific DNA-methyltransferase (adenine-specific); PFAM: DNA methylase, adenine-specific.
  
 
 0.754
Dde_2495
KEGG: cpc:Cpar_0962 hypothetical protein.
  
    0.647
Dde_2496
PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: cph:Cpha266_1398 restriction modification system DNA specificity subunit.
  
  
 0.622
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.