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Dde_2886 Dde_2886 Dde_2885 Dde_2885 Dde_2887 Dde_2887 Dde_2888 Dde_2888 Dde_3035 Dde_3035 Dde_2889 Dde_2889 Dde_2891 Dde_2891 Dde_2892 Dde_2892 Dde_2894 Dde_2894 Dde_2896 Dde_2896 Dde_2883 Dde_2883
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Dde_2886TIGRFAM: Methyltransferase FkbM; KEGG: hhe:HH0182 hypothetical protein. (285 aa)    
Predicted Functional Partners:
Dde_2885
PFAM: Glycosyl transferase, group 1; KEGG: sus:Acid_6620 glycosyl transferase, group 1.
     
 0.778
Dde_2887
PFAM: Glycosyl transferase, group 1; KEGG: dba:Dbac_3288 glycosyl transferase group 1.
 
   
 0.753
Dde_2888
UDP-glucose 4-epimerase; KEGG: dba:Dbac_3287 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase.
     
 0.718
Dde_3035
TIGRFAM: Methyltransferase FkbM; KEGG: aeh:Mlg_0699 FkbM family methyltransferase.
 
     0.693
Dde_2889
PFAM: Glycosyl transferase, family 2; KEGG: dba:Dbac_3281 glycosyl transferase family 2.
 
  
 0.681
Dde_2891
TIGRFAM: Asparagine synthase, glutamine-hydrolyzing; KEGG: nhl:Nhal_3235 exosortase 1 system-associated amidotransferase 1; PFAM: Asparagine synthase; Glutamine amidotransferase, class-II.
 
     0.662
Dde_2892
PFAM: Methyltransferase type 11; KEGG: ppd:Ppro_1423 methyltransferase type 11.
 
    0.635
Dde_2894
Methyltransferase FkbM family; KEGG: ret:RHE_CH00769 lipolysaccharide tri-O-methyl-fucosylation protein (SAM-dependent methyltransferase protein); TIGRFAM: Methyltransferase FkbM; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase.
 
    
0.620
Dde_2896
PFAM: ABC-2 type transporter; KEGG: cyj:Cyan7822_5719 ABC-2 type transporter.
 
     0.617
Dde_2883
KEGG: dba:Dbac_3282 sugar transferase.
 
  
 0.602
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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