STRINGSTRING
Dde_2921 Dde_2921 Dde_2920 Dde_2920 Dde_2922 Dde_2922 Dde_2923 Dde_2923 Dde_2924 Dde_2924 Dde_3433 Dde_3433 Dde_3435 Dde_3435 Dde_1542 Dde_1542 Dde_3432 Dde_3432 Dde_3623 Dde_3623 Dde_3431 Dde_3431
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_2921KEGG: dvl:Dvul_2612 hypothetical protein. (339 aa)    
Predicted Functional Partners:
Dde_2920
SMART: von Willebrand factor, type A; KEGG: dvl:Dvul_2614 von Willebrand factor type A.
 
  
 0.952
Dde_2922
KEGG: dvl:Dvul_2608 ATPase; PFAM: ATPase associated with various cellular activities, AAA-5; SMART: ATPase, AAA+ type, core.
 
  
 0.916
Dde_2923
KEGG: dvu:DVU2033 hypothetical protein.
 
     0.893
Dde_2924
ERF family protein; PFAM: ERF; KEGG: dvu:DVU2032 ERF family protein.
 
   
 0.848
Dde_3433
KEGG: dvl:Dvul_2608 ATPase; PFAM: ATPase associated with various cellular activities, AAA-5; SMART: ATPase, AAA+ type, core.
 
  
 0.805
Dde_3435
SMART: von Willebrand factor, type A; KEGG: dvl:Dvul_2614 von Willebrand factor type A.
 
  
 0.797
Dde_1542
KEGG: dvm:DvMF_0816 acetyl-CoA carboxylase; PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region.
 
  
 0.754
Dde_3432
KEGG: dvu:DVU2033 hypothetical protein.
 
     0.750
Dde_3623
PFAM: Metallophosphoesterase; KEGG: dvm:DvMF_2312 metallophosphoesterase.
    
 
 0.742
Dde_3431
ERF family protein; PFAM: ERF; KEGG: dvu:DVU2032 ERF family protein.
 
   
 0.737
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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