STRINGSTRING
Dde_3039 Dde_3039 Dde_1272 Dde_1272 cutD cutD Dde_3054 Dde_3054 Dde_3289 Dde_3289 Dde_3288 Dde_3288 Dde_3237 Dde_3237 Dde_3291 Dde_3291 Dde_0278 Dde_0278 Dde_1670 Dde_1670 tpiA tpiA
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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Score
Dde_3039PFAM: Pyruvate formate-lyase, PFL; Formate C-acetyltransferase glycine radical; KEGG: pca:Pcar_0937 pyruvate-formate lyase. (808 aa)    
Predicted Functional Partners:
Dde_1272
SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Glycyl radical enzyme-activating; KEGG: dvl:Dvul_0490 glycyl-radical activating family protein; PFAM: Radical SAM; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup.
 
  
 0.928
cutD
Glycyl-radical enzyme activating protein family; Catalyzes activation of the choline trimethylamine-lyase CutC under anaerobic conditions by generation of an organic free radical on a glycine residue, via a homolytic cleavage of S-adenosyl-L-methionine (SAM). Is involved in the anaerobic choline utilization pathway that allows D.alaskensis to grow on choline as a source of carbon and energy; Belongs to the organic radical-activating enzymes family.
 
  
 0.922
Dde_3054
Glycyl-radical enzyme activating protein family; TIGRFAM: Glycyl radical enzyme-activating; KEGG: pth:PTH_2421 pyruvate-formate lyase-activating enzyme; PFAM: Radical SAM; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup.
 
  
 0.894
Dde_3289
KEGG: dsa:Desal_0464 hypothetical protein.
 
     0.617
Dde_3288
PFAM: Protein of unknown function DUF6, transmembrane; KEGG: dsa:Desal_0465 hypothetical protein.
  
     0.611
Dde_3237
SMART: Pyruvate-flavodoxin oxidoreductase, EKR domain; TIGRFAM: Pyruvate-flavodoxin oxidoreductase; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; Pyruvate-flavodoxin oxidoreductase, EKR domain; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Pyruvate/ketoisovalerate oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
     
 0.597
Dde_3291
KEGG: dsa:Desal_0463 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR.
  
   
 0.553
Dde_0278
Anaerobic ribonucleoside-triphosphate reductase activating enzyme; PFAM: Radical SAM; KEGG: dvm:DvMF_1818 radical SAM domain protein.
  
  
 0.528
Dde_1670
KEGG: drt:Dret_0731 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB.
  
  
 0.528
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
   
 
 0.463
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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