STRINGSTRING
selA selA Dde_2225 Dde_2225 serS serS Dde_3173 Dde_3173 Dde_1959 Dde_1959 Dde_3060 Dde_3060 Dde_3513 Dde_3513 Dde_3512 Dde_3512 Dde_0717 Dde_0717 Dde_0813 Dde_0813 Dde_3061 Dde_3061
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
selAL-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. (483 aa)    
Predicted Functional Partners:
Dde_2225
KEGG: dsa:Desal_0640 selenide, water dikinase; TIGRFAM: Selenide water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein, C-terminal.
 
  
 0.986
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
     
 0.935
Dde_3173
TIGRFAM: Translation elongation factor, selenocysteine-specific; Small GTP-binding protein; KEGG: dvm:DvMF_2506 selenocysteine-specific translation elongation factor; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor SelB, winged helix, type 3; Translation elongation factor SelB, winged helix, type 2; Translation elongation factor EFTu/EF1A, domain 2.
 
  
 0.882
Dde_1959
TIGRFAM: SirA-related, selenium metabolism; KEGG: dvm:DvMF_0368 hypothetical protein; Belongs to the sulfur carrier protein TusA family.
 
  
 0.795
Dde_3060
UDP-glucuronate decarboxylase; KEGG: dvm:DvMF_1312 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase.
       0.671
Dde_3513
TIGRFAM: Formate dehydrogenase, alpha subunit, anaerobic; KEGG: dvl:Dvul_0501 formate dehydrogenase, subunit alpha; PFAM: Molydopterin dinucleotide-binding region; Molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.637
Dde_3512
PFAM: Molybdopterin oxidoreductase Fe4S4 region; KEGG: dvl:Dvul_0501 formate dehydrogenase, subunit alpha.
 
  
 0.594
Dde_0717
TIGRFAM: Formate dehydrogenase, alpha subunit, anaerobic; Twin-arginine translocation pathway, signal sequence; KEGG: dvu:DVU0587 formate dehydrogenase subunit alpha, selenocysteine-containing; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; Twin-arginine translocation pathway, signal sequence, subgroup; Molydopterin dinucleotide-binding region.
 
  
 0.566
Dde_0813
TIGRFAM: Formate dehydrogenase, alpha subunit, anaerobic; Twin-arginine translocation pathway, signal sequence; KEGG: das:Daes_2804 formate dehydrogenase subunit alpha; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding region; Twin-arginine translocation pathway, signal sequence, subgroup; Molybdopterin oxidoreductase Fe4S4 region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.563
Dde_3061
KEGG: dvl:Dvul_0481 aminopeptidase 1; PFAM: Peptidase M18, aminopeptidase I.
       0.545
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
Server load: low (22%) [HD]