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Dde_3078 Dde_3078 Dde_3079 Dde_3079 Dde_2020 Dde_2020 Dde_2018 Dde_2018 dnaK dnaK Dde_1256 Dde_1256 Dde_1445 Dde_1445 Dde_1444 Dde_1444 Dde_2749 Dde_2749 Dde_3194 Dde_3194 Dde_3237 Dde_3237
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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Score
Dde_3078Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. (280 aa)    
Predicted Functional Partners:
Dde_3079
Cysteine desulfurase NifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
 
 0.999
Dde_2020
HesB/YadR/YfhF-family protein; PFAM: FeS cluster biogenesis; KEGG: dvl:Dvul_1688 HesB/YadR/YfhF-family protein; Belongs to the HesB/IscA family.
 
 
 0.996
Dde_2018
HesB/YadR/YfhF-family protein; PFAM: FeS cluster biogenesis; KEGG: dvl:Dvul_2625 HesB/YadR/YfhF-family protein.
  
 
 0.995
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 
 0.974
Dde_1256
KEGG: drt:Dret_1067 fumarate reductase iron-sulfur subunit; TIGRFAM: Succinate dehydrogenase/fumarate reductase iron-sulphur protein.
  
 
 0.951
Dde_1445
KEGG: dvl:Dvul_1972 ABC transporter; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.
  
  
 0.950
Dde_1444
SufBD protein; PFAM: SUF system FeS cluster assembly, SufBD; KEGG: dvm:DvMF_0915 SufBD protein.
  
  
 0.940
Dde_2749
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: dat:HRM2_41980 Hbr3.
  
 
 0.937
Dde_3194
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: dvm:DvMF_2480 rubredoxin-type Fe(Cys)4 protein.
  
 
 0.937
Dde_3237
SMART: Pyruvate-flavodoxin oxidoreductase, EKR domain; TIGRFAM: Pyruvate-flavodoxin oxidoreductase; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; Pyruvate-flavodoxin oxidoreductase, EKR domain; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Pyruvate/ketoisovalerate oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
  
  
 0.928
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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