STRINGSTRING
Dde_3141 Dde_3141 Dde_3142 Dde_3142 Dde_1149 Dde_1149 Dde_3139 Dde_3139 Dde_3140 Dde_3140 Dde_3023 Dde_3023 Dde_3700 Dde_3700 Dde_2642 Dde_2642 Dde_3138 Dde_3138 Dde_1195 Dde_1195 Dde_0937 Dde_0937
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
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Experiments
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Textmining
[Homology]
Score
Dde_3141PFAM: NADPH-dependent FMN reductase; KEGG: mac:MA0418 iron-sulfur flavoprotein. (178 aa)    
Predicted Functional Partners:
Dde_3142
KEGG: dsa:Desal_3565 hypothetical protein.
 
     0.746
Dde_1149
KEGG: dvm:DvMF_1110 hypothetical protein.
  
     0.643
Dde_3139
KEGG: ddc:Dd586_2070 cupin 2 conserved barrel domain-containing protein.
 
    0.606
Dde_3140
PFAM: Carboxymuconolactone decarboxylase; KEGG: dsa:Desal_3563 carboxymuconolactone decarboxylase.
 
     0.606
Dde_3023
PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dae:Dtox_2803 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
   
 0.544
Dde_3700
KEGG: vpe:Varpa_0123 hypothetical protein.
   
  
 0.538
Dde_2642
PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dvl:Dvul_0703 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
  
     0.488
Dde_3138
KEGG: dsa:Desal_3560 membrane protein.
 
    0.483
Dde_1195
PFAM: Nitroreductase-like; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dba:Dbac_0625 nitroreductase.
 
  
 0.472
Dde_0937
KEGG: dbr:Deba_1795 hypothetical protein.
   
  
 0.468
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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