STRINGSTRING
Dde_3174 Dde_3174 Dde_1184 Dde_1184 Dde_1183 Dde_1183 Dde_2594 Dde_2594 Dde_1328 Dde_1328 Dde_1327 Dde_1327 Dde_2593 Dde_2593 Dde_3237 Dde_3237 Dde_0274 Dde_0274 Dde_0273 Dde_0273 Dde_1568 Dde_1568
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Dde_3174ABC-type transporter, periplasmic subunit; PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: chy:CHY_1128 oligopeptide/dipeptide ABC transporter peptide-binding protein. (523 aa)    
Predicted Functional Partners:
Dde_1184
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ddf:DEFDS_2067 peptide/nickel ABC transporter permease.
 
 0.887
Dde_1183
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ddf:DEFDS_2066 peptide/nickel ABC transporter permease.
 
 0.878
Dde_2594
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dvm:DvMF_0921 binding-protein-dependent transport systems inner membrane component.
 
 0.866
Dde_1328
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: das:Daes_0291 binding-protein-dependent transporter inner membrane component.
 
 0.822
Dde_1327
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: das:Daes_0292 binding-protein-dependent transporter inner membrane component.
 
 0.812
Dde_2593
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dvm:DvMF_0920 binding-protein-dependent transport systems inner membrane component.
 
 0.811
Dde_3237
SMART: Pyruvate-flavodoxin oxidoreductase, EKR domain; TIGRFAM: Pyruvate-flavodoxin oxidoreductase; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; Pyruvate-flavodoxin oxidoreductase, EKR domain; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Pyruvate/ketoisovalerate oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
  
    0.798
Dde_0274
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dvm:DvMF_1828 binding-protein-dependent transport systems inner membrane component.
 
 0.759
Dde_0273
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dvm:DvMF_1827 binding-protein-dependent transport systems inner membrane component.
 
 0.743
Dde_1568
ABC-type transporter, periplasmic subunit; PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: dvm:DvMF_0788 extracellular solute-binding protein family 5.
  
     0.743
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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