STRINGSTRING
Dde_3177 Dde_3177 Dde_3176 Dde_3176 Dde_3175 Dde_3175 Dde_3224 Dde_3224 Dde_1492 Dde_1492 Dde_2939 Dde_2939 Dde_2491 Dde_2491 Dde_3174 Dde_3174 Dde_0876 Dde_0876 Dde_3370 Dde_3370 Dde_1703 Dde_1703
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_3177PFAM: Branched-chain amino acid transport; KEGG: geb:GM18_0372 branched-chain amino acid transport. (99 aa)    
Predicted Functional Partners:
Dde_3176
AzlC family protein; PFAM: AzlC-like; KEGG: geb:GM18_0371 AzlC family protein.
 
   
 0.936
Dde_3175
Protein of unknown function UPF0047; KEGG: das:Daes_3009 hypothetical protein; TIGRFAM: Uncharacterized protein family UPF0047; PFAM: Uncharacterized protein family UPF0047.
       0.523
Dde_3224
KEGG: dvm:DvMF_1801 phage shock protein C, PspC; TIGRFAM: Phage shock protein C; PFAM: PspC.
  
     0.466
Dde_1492
KEGG: dvl:Dvul_1998 hypothetical protein.
  
     0.442
Dde_2939
KEGG: dvl:Dvul_2272 hypothetical protein.
  
     0.439
Dde_2491
KEGG: dsa:Desal_3555 hypothetical protein.
  
     0.433
Dde_3174
ABC-type transporter, periplasmic subunit; PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: chy:CHY_1128 oligopeptide/dipeptide ABC transporter peptide-binding protein.
       0.422
Dde_0876
PFAM: Uncharacterized protein family UPF0324, prokaryote; KEGG: dba:Dbac_2656 hypothetical protein.
  
     0.421
Dde_3370
KEGG: dbr:Deba_1593 hypothetical protein.
  
     0.415
Dde_1703
PFAM: Major facilitator superfamily MFS-1; KEGG: dvu:DVU1435 hypothetical protein.
  
     0.400
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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