Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Dde_3186 | Dde_3187 | Dde_3186 | Dde_3187 | PFAM: Protein of unknown function DUF2065. | TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: dvl:Dvul_0210 UDP-glucose/GDP-mannose dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. | 0.541 |
Dde_3186 | mqnB | Dde_3186 | Dde_3188 | PFAM: Protein of unknown function DUF2065. | Futalosine nucleosidase; Catalyzes the hydrolysis of futalosine (FL) to dehypoxanthine futalosine (DHFL) and hypoxanthine, a step in the biosynthesis of menaquinone (MK, vitamin K2). | 0.417 |
Dde_3187 | Dde_3186 | Dde_3187 | Dde_3186 | TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: dvl:Dvul_0210 UDP-glucose/GDP-mannose dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. | PFAM: Protein of unknown function DUF2065. | 0.541 |
Dde_3187 | mqnB | Dde_3187 | Dde_3188 | TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: dvl:Dvul_0210 UDP-glucose/GDP-mannose dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. | Futalosine nucleosidase; Catalyzes the hydrolysis of futalosine (FL) to dehypoxanthine futalosine (DHFL) and hypoxanthine, a step in the biosynthesis of menaquinone (MK, vitamin K2). | 0.637 |
mqnB | Dde_3186 | Dde_3188 | Dde_3186 | Futalosine nucleosidase; Catalyzes the hydrolysis of futalosine (FL) to dehypoxanthine futalosine (DHFL) and hypoxanthine, a step in the biosynthesis of menaquinone (MK, vitamin K2). | PFAM: Protein of unknown function DUF2065. | 0.417 |
mqnB | Dde_3187 | Dde_3188 | Dde_3187 | Futalosine nucleosidase; Catalyzes the hydrolysis of futalosine (FL) to dehypoxanthine futalosine (DHFL) and hypoxanthine, a step in the biosynthesis of menaquinone (MK, vitamin K2). | TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: dvl:Dvul_0210 UDP-glucose/GDP-mannose dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. | 0.637 |