STRINGSTRING
Dde_3200 Dde_3200 Dde_3198 Dde_3198 Dde_3202 Dde_3202 Dde_3201 Dde_3201 Dde_1380 Dde_1380 Dde_0204 Dde_0204 Dde_0473 Dde_0473 Dde_1376 Dde_1376 Dde_1377 Dde_1377 Dde_0157 Dde_0157 Dde_3221 Dde_3221
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Experiments
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[Homology]
Score
Dde_3200PFAM: Cobyrinic acid a,c-diamide synthase; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: drt:Dret_0442 cobyrinic acid ac-diamide synthase. (311 aa)    
Predicted Functional Partners:
Dde_3198
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: drt:Dret_0445 dinitrogenase iron-molybdenum cofactor biosynthesis protein.
 
   
 0.898
Dde_3202
ATPase-like, ParA/MinD; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
 
 
 
 0.876
Dde_3201
PFAM: Cobyrinic acid a,c-diamide synthase; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: drt:Dret_0441 cobyrinic acid ac-diamide synthase.
 
  
0.864
Dde_1380
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: dvl:Dvul_1569 hypothetical protein.
 
   
 0.803
Dde_0204
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: dvl:Dvul_2737 dinitrogenase iron-molybdenum cofactor biosynthesis.
 
   
 0.751
Dde_0473
TIGRFAM: Formate dehydrogenase, alpha subunit; KEGG: dps:DP0481 formate dehydrogenase, chain A; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; Molydopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 
 0.664
Dde_1376
KEGG: dvm:DvMF_3003 putative transcriptional regulator, GntR family; PFAM: Aminotransferase, class I/II.
    
   0.642
Dde_1377
KEGG: dvm:DvMF_3003 putative transcriptional regulator, GntR family.
    
   0.642
Dde_0157
KEGG: dvm:DvMF_2175 transcriptional regulator, GntR family with aminotransferase domain; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/II; SMART: HTH transcriptional regulator, GntR.
    
   0.584
Dde_3221
PFAM: Domain of unknown function DUF89; KEGG: dvl:Dvul_0388 hypothetical protein.
 
     0.566
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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