STRINGSTRING
Dde_3319 Dde_3319 Dde_3316 Dde_3316 Dde_3317 Dde_3317 Dde_3318 Dde_3318 Dde_3315 Dde_3315 Dde_3320 Dde_3320 Dde_3314 Dde_3314
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_3319KEGG: sat:SYN_00361 hypothetical protein. (327 aa)    
Predicted Functional Partners:
Dde_3316
PFAM: Glycosyl transferase, group 1; KEGG: mgm:Mmc1_0391 glycosyl transferase, group 1.
       0.732
Dde_3317
KEGG: eba:ebA4265 amidotransferase, asparagine synthase (glutamine-hydrolyzing); TIGRFAM: Asparagine synthase, glutamine-hydrolyzing; PFAM: Asparagine synthase; Glutamine amidotransferase, class-II.
       0.732
Dde_3318
PFAM: Methyltransferase type 11; KEGG: azl:AZL_f01090 methyltransferase.
       0.732
Dde_3315
KEGG: das:Daes_1981 hypothetical protein.
       0.684
Dde_3320
PFAM: Glycosyl transferase, family 2; KEGG: atm:ANT_27690 putative glycosyltransferase.
       0.469
Dde_3314
KEGG: son:SO_A0180 hypothetical protein.
       0.439
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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