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Dde_3356 Dde_3356 Dde_0517 Dde_0517 Dde_3355 Dde_3355 Dde_3351 Dde_3351 Dde_3354 Dde_3354 Dde_3350 Dde_3350 Dde_3352 Dde_3352 Dde_3353 Dde_3353 Dde_3347 Dde_3347 Dde_3348 Dde_3348 Dde_3349 Dde_3349
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_3356Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (95 aa)    
Predicted Functional Partners:
Dde_0517
Histone family protein DNA-binding protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
  
 
 0.888
Dde_3355
KEGG: dvu:DVU1754 hypothetical protein.
   
   0.734
Dde_3351
KEGG: dma:DMR_14500 hypothetical protein.
       0.710
Dde_3354
KEGG: dvu:DVU1136 host-nuclease inhibitor protein Gam.
       0.708
Dde_3350
PFAM: Transposase-like, Mu, C-terminal; Integrase, catalytic core; Transposase MuA/Repressor CI, DNA-binding; KEGG: dma:DMR_14490 hypothetical protein.
       0.699
Dde_3352
KEGG: dma:DMR_14510 hypothetical protein.
       0.698
Dde_3353
Hypothetical protein.
       0.698
Dde_3347
KEGG: dvu:DVU1143 hypothetical protein.
       0.670
Dde_3348
KEGG: dvm:DvMF_0712 hypothetical protein.
       0.670
Dde_3349
Hypothetical protein.
       0.670
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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