STRINGSTRING
Dde_3385 Dde_3385 Dde_3386 Dde_3386 Dde_3387 Dde_3387 Dde_3388 Dde_3388 Dde_3389 Dde_3389 Dde_3384 Dde_3384 Dde_3383 Dde_3383 Dde_3378 Dde_3378 Dde_3379 Dde_3379 Dde_3380 Dde_3380 Dde_3381 Dde_3381
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_3385Hypothetical protein. (61 aa)    
Predicted Functional Partners:
Dde_3386
KEGG: aco:Amico_1111 phage tail tape measure protein, TP901 family; TIGRFAM: Phage tail tape measure protein TP901, core region; PFAM: Phage tail tape measure protein TP901, core region.
       0.773
Dde_3387
KEGG: dvu:DVU1106 hypothetical protein.
       0.773
Dde_3388
KEGG: dvu:DVU1105 hypothetical protein.
       0.773
Dde_3389
KEGG: dvu:DVU1104 baseplate assembly protein.
       0.773
Dde_3384
Hypothetical protein.
       0.723
Dde_3383
KEGG: gem:GM21_3661 hypothetical protein.
       0.698
Dde_3378
PFAM: Protein of unknown function DUF1320; KEGG: dvm:DvMF_1289 protein of unknown function DUF1320.
       0.683
Dde_3379
TIGRFAM: Phage virion morphogenesis (putative tail completion) protein; KEGG: dvu:DVU1114 virion morphogenesis protein.
       0.683
Dde_3380
KEGG: dvm:DvMF_1291 hypothetical protein.
       0.683
Dde_3381
Hypothetical protein.
       0.683
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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