STRINGSTRING
Dde_3398 Dde_3398 Dde_3399 Dde_3399 xerC-2 xerC-2 xerC xerC topA topA Dde_3485 Dde_3485 Dde_0784 Dde_0784 Dde_0140 Dde_0140 gpt gpt Dde_0620 Dde_0620 Dde_1955 Dde_1955
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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[Homology]
Score
Dde_3398Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: dma:DMR_34440 site-specific recombinase; Belongs to the 'phage' integrase family. (387 aa)    
Predicted Functional Partners:
Dde_3399
Hypothetical protein.
       0.773
xerC-2
Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
   
 0.742
xerC
Integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
   
 0.740
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
 
  
 0.635
Dde_3485
PFAM: Prephenate dehydrogenase; KEGG: dvm:DvMF_1747 prephenate dehydrogenase.
  
    0.508
Dde_0784
PFAM: Phosphoribosyltransferase; KEGG: dvm:DvMF_2857 phosphoribosyltransferase.
   
    0.505
Dde_0140
PFAM: Phosphoribosyltransferase; KEGG: dra:DR_0878 adenine phosphoribosyltransferase.
   
    0.475
gpt
Xanthine phosphoribosyltransferase; Acts on guanine, xanthine and to a lesser extent hypoxanthine; Belongs to the purine/pyrimidine phosphoribosyltransferase family. XGPT subfamily.
   
    0.475
Dde_0620
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: dpr:Despr_0398 integrase family protein; Belongs to the 'phage' integrase family.
  
     0.452
Dde_1955
PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; KEGG: dvl:Dvul_1420 cell division FtsK/SpoIIIE.
 
   
 0.409
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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