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Dde_3426 Dde_3426 Dde_3424 Dde_3424 Dde_3425 Dde_3425 Dde_3427 Dde_3427 Dde_3429 Dde_3429 Dde_3430 Dde_3430 Dde_3428 Dde_3428 Dde_2495 Dde_2495 Dde_2846 Dde_2846 Dde_2783 Dde_2783 Dde_1560 Dde_1560
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Dde_3426AAA-4 family protein; PFAM: ATPase associated with various cellular activities, AAA-4; KEGG: tme:Tmel_1088 putative transcriptional regulator. (438 aa)    
Predicted Functional Partners:
Dde_3424
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
    0.889
Dde_3425
PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: dbr:Deba_2538 restriction modification system DNA specificity domain protein.
  
    0.886
Dde_3427
KEGG: dbr:Deba_2540 site-specific DNA-methyltransferase (adenine-specific); PFAM: DNA methylase, adenine-specific.
  
    0.832
Dde_3429
TIGRFAM: Restriction endonuclease, type I, EcoRI, M subunit; KEGG: dbr:Deba_2542 type I restriction-modification system, M subunit; PFAM: DNA methylase, adenine-specific.
  
    0.832
Dde_3430
KEGG: sat:SYN_01828 putative cytoplasmic protein; TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: Prophage CP4-57 regulatory.
       0.782
Dde_3428
KEGG: sun:SUN_1095 hypothetical protein.
       0.773
Dde_2495
KEGG: cpc:Cpar_0962 hypothetical protein.
  
    0.633
Dde_2846
PFAM: Protein of unknown function DUF218; KEGG: dsa:Desal_2506 hypothetical protein.
  
     0.614
Dde_2783
KEGG: das:Daes_0509 rhodanese domain-containing protein.
  
   
 0.607
Dde_1560
Regulatory protein MarR; PFAM: HTH transcriptional regulator, MarR; KEGG: rle:RL3156 MarR family transcriptional regulatory protein.
  
     0.561
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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