STRINGSTRING
Dde_3509 Dde_3509 Dde_3510 Dde_3510 Dde_3508 Dde_3508 Dde_3511 Dde_3511
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_3509PFAM: Protein of unknown function DUF898, transmembrane bacterial; KEGG: gbe:GbCGDNIH1_1250 hypothetical protein. (370 aa)    
Predicted Functional Partners:
Dde_3510
PFAM: Peptidase M48, Ste24p; KEGG: rce:RC1_3147 peptidase M48 family, putative.
 
     0.869
Dde_3508
KEGG: dma:DMR_01390 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling.
       0.516
Dde_3511
PFAM: HTH transcriptional regulator, LysR; KEGG: dsa:Desal_2665 ModE family transcriptional regulator.
       0.440
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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