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Dde_3510 Dde_3510 Dde_3509 Dde_3509 Dde_0107 Dde_0107 Dde_0453 Dde_0453 Dde_1855 Dde_1855 Dde_1436 Dde_1436 Dde_3508 Dde_3508 Dde_3511 Dde_3511 Dde_2336 Dde_2336 Dde_3627 Dde_3627
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Dde_3510PFAM: Peptidase M48, Ste24p; KEGG: rce:RC1_3147 peptidase M48 family, putative. (370 aa)    
Predicted Functional Partners:
Dde_3509
PFAM: Protein of unknown function DUF898, transmembrane bacterial; KEGG: gbe:GbCGDNIH1_1250 hypothetical protein.
 
     0.869
Dde_0107
PFAM: Peptidase M48, Ste24p; KEGG: dvl:Dvul_0012 peptidase M48, Ste24p.
  
     0.662
Dde_0453
PFAM: MotA/TolQ/ExbB proton channel; KEGG: das:Daes_0574 MotA/TolQ/ExbB proton channel.
 
 
 0.573
Dde_1855
PFAM: Peptidase M48, Ste24p; KEGG: das:Daes_1661 peptidase M48 Ste24p.
  
     0.557
Dde_1436
PFAM: Peptidase M23; KEGG: dvl:Dvul_0922 peptidase M23B.
 
 
 
 0.551
Dde_3508
KEGG: dma:DMR_01390 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling.
       0.494
Dde_3511
PFAM: HTH transcriptional regulator, LysR; KEGG: dsa:Desal_2665 ModE family transcriptional regulator.
     
 0.462
Dde_2336
KEGG: psl:Psta_3109 hypothetical protein.
 
   
 0.423
Dde_3627
Outer membrane efflux protein; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
  
  
 0.405
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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