STRINGSTRING
Dde_4000 Dde_4000 Dde_1402 Dde_1402 Dde_1404 Dde_1404 Dde_1656 Dde_1656 Dde_2890 Dde_2890 Dde_0256 Dde_0256 Dde_1401 Dde_1401 Dde_0846 Dde_0846 Dde_1405 Dde_1405 Dde_1836 Dde_1836 Dde_3138 Dde_3138
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_4000PFAM: Glycosyl transferase, group 1; KEGG: drt:Dret_2032 glycosyl transferase group 1. (365 aa)    
Predicted Functional Partners:
Dde_1402
PFAM: Glycosyl transferase, group 1; KEGG: dvm:DvMF_3016 glycosyl transferase group 1.
 
    
0.851
Dde_1404
PFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: dvu:DVU1062 hypothetical protein.
  
    0.805
Dde_1656
PFAM: Glycosyl transferase, group 1; KEGG: dvm:DvMF_0573 glycosyl transferase group 1.
  
     0.735
Dde_2890
PFAM: Glycosyl transferase, group 1; KEGG: gbm:Gbem_3442 group glycosyltransferase.
  
     0.721
Dde_0256
PFAM: Glycosyl transferase, group 1; KEGG: dvm:DvMF_2384 glycosyl transferase group 1.
  
     0.718
Dde_1401
Histidinol-phosphate transaminase; KEGG: dvl:Dvul_1935 aminotransferase, class I and II; PFAM: Aminotransferase, class I/II.
       0.715
Dde_0846
PFAM: Glycosyl transferase, group 1; KEGG: maq:Maqu_1638 glycosyl transferase, group 1.
  
     0.647
Dde_1405
KEGG: dvm:DvMF_3020 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; Signal transduction response regulator, receiver region.
   
   0.560
Dde_1836
PFAM: Glycosyl transferase, group 1; KEGG: dvu:DVU1803 glycosyl transferase group 1 family protein.
  
     0.543
Dde_3138
KEGG: dsa:Desal_3560 membrane protein.
   
 
 0.520
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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